Author

Ioannis Kanakis

University of ChesterORCID 0000-0001-6410-1482Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Organism:mouse· 2 Approach:statistical model· 2 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Research Focus:spatial domain detection· 1

Frequent Co-Authors

Aphrodite VasilakiiD· 2 shared Ioanna MyrtziouiD· 2 shared Mandy Jayne PeffersiD· 2 shared Ufuk ErsoyiD· 2 shared Alexandra Semicheva· 1 shared Julie L. AspdeniD· 1 shared Katarzyna Goljanek‐WhysalliD· 1 shared Leighton FolkesiD· 1 shared

Activity by Year

2021-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 26 mutual co-author links

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2 shared papersCell Biology

Aphrodite VasilakiORCID

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3 papers

Recent·Most cited

Molecular BiologybioRxivPreprintSep 18, 2025

Characterising the effect of age and sex on post-transcriptional regulation in synovial joint tissues

Ufuk Ersoy, Sam T. Haldenby, Ioannis Kanakis…·Simon R. Tew

This study investigates how age and sex affect mRNA stability and polyadenylation in equine joint tissues, revealing sex-specific differences in transcript stability and age-related changes in polyadenylation site usage.

DOI 10.1101/2025.09.18.677035

bulk RNA-seqstatistical model

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Cell BiologyInternational Journal of Molecular SciencesPeer-reviewedApr 10, 2024

Defining the most potent osteoinductive culture conditions for MC3T3-E1 cells reveals no implication of oxidative stress or energy metabolism

Alexandra Semicheva, Ufuk Ersoy, Aphrodite Vasilaki…·Ioannis Kanakis

The study identifies optimal culture conditions for MC3T3-E1 cells to achieve mineralization, finding no role for oxidative stress or energy metabolism.

10 citations

mousebulk RNA-seq

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Molecular BiologyCellsPeer-reviewedMay 11, 2021

Small-RNA sequencing reveals altered skeletal muscle microRNAs and snoRNAs signatures in weanling male offspring from mouse dams fed a low protein diet during lactation

Ioannis Kanakis, Moussira Alameddine, Leighton Folkes…·Aphrodite Vasilaki

The paper uses small-RNA sequencing to identify altered microRNA and snoRNA signatures in skeletal muscle of male mouse offspring from dams with low protein diets during lactation.

9 citations

mousestatistical model

𝕏 PostBluesky