Shabhonam Caim

This study shows that infant gut microbiota at 1 month are most responsive to dietary changes, while 18-month-olds show resilience, with formula affecting fewer metabolic pathways than breast milk.

This study uses nanopore sequencing to rapidly profile preterm infant gut microbiota, enabling pathogen detection and antimicrobial resistance profiling within one hour.

The paper introduces a method for rapid microbiome analytics using streaming histogram sketches, enabling efficient classification and similarity searches of microbiome data.

The paper presents an algorithm to improve transcript annotation by integrating multiple RNA-Seq assemblies and introduces an open-source tool for this purpose.