Sarah Bastkowski

This paper uses ICA to analyze TraDIS-Xpress data from E. coli, identifying functional modules of antimicrobial resistance genes across multiple stress conditions.

This study identifies genes critical for Pseudomonas aeruginosa biofilm survival under ciprofloxacin exposure, revealing key pathways and potential therapeutic targets.

This study identifies Pseudomonas isolates that inhibit Salmonella growth in vitro and in planta, showing environment-specific metabolic changes and multifactorial biocontrol mechanisms.

LoRTIS-SS enables transposon insertion site mapping using long-read sequencing, improving accuracy in repeated genomic regions compared to short-read methods.

AlbaTraDIS analyzes transposon mutagenesis data to identify genes involved in stress survival, demonstrating its utility in identifying Triclosan resistance genes in E. coli.

SPECTRE provides open-source tools for analyzing reticulate evolution using split-networks and supports integration into analysis pipelines.