Veronika R. Kedlian

The paper creates a regulon atlas mapping TF activity across human cell types and uses it to link disease signatures to cell types and TFs, improving disease risk locus analysis.

This study uses single-cell transcriptomics to identify gene regulatory networks and lineage trajectories in human fetal thymic epithelial cells, revealing interferon response pathways that distinguish thymic epithelium from other anterior foregut-derived organs.

This study creates a single-cell and single-nucleus transcriptomic atlas of human skeletal muscle ageing, revealing mechanisms in muscle stem cells, myofibers, and the microenvironment.

cell2location uses a Bayesian model to integrate single-cell and spatial transcriptomics, mapping cell types in situ across mouse brain regions and human lymph node immune compartments.

MicroExonator identifies and quantifies microexons across mouse embryonic development, revealing 332 differentially spliced microexons and cell-type specific inclusion in neuronal subpopulations.

The paper examines age-related changes in transcriptome heterogeneity using human brain data, finding a consistent increase in gene and pathway variability with age.