Author

Jeremy J. Velazquez

University of PittsburghORCID 0000-0001-6765-9537Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Developmental Biology· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1 Approach:experimental assay· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Mo R. EbrahimkhaniiD· 3 shared Joshua HislopiD· 2 shared Ziv Bar‐JosephiD· 2 shared Amir AlaviiD· 1 shared Berna SözeniD· 1 shared Chulan KwoniD· 1 shared Da PengiD· 1 shared Dongshunyi LiiD· 1 shared

Activity by Year

2021-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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3 shared papersDevelopmental Biology

Mo R. EbrahimkhaniORCID

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3 papers

Recent·Most cited

Developmental BiologyNaturePeer-reviewedDec 13, 2023

Modelling Human Post-Implantation Development via Extra-Embryonic Niche Engineering

Joshua Hislop, Qi Song, Kamyar Keshavarz F.…·Mo R. Ebrahimkhani

The paper introduces iDiscoid, a human stem cell model of post-implantation development that recapitulates key morphogenetic features and offers a platform for studying early human development.

96 citationstop 1%

humanexperimental assay

Developmental BiologybioRxivPreprintSep 7, 2022

Platform-Agnostic CellNet (PACNet) enables cross-study meta-analysis of cell fate engineering protocols

Emily K.W. Lo, Jeremy J. Velazquez, Da Peng…·Patrick Cahan

PACNet enables platform-agnostic comparison of cell fate engineering protocols by analyzing transcriptomic data from multiple studies and identifying best practices and off-target effects.

3 citations

humanbulk RNA-seq

BioinformaticsbioRxivPreprintJul 28, 2021

Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data

Dongshunyi Li, Jeremy J. Velazquez, Jun Ding…·Ziv Bar‐Joseph

The paper introduces TraSig, a method that uses pseudotime ordering from scRNA-Seq data to improve the inference of cell-cell interactions by identifying ligand-receptor pairs with similar trajectories.

3 citations

humanscRNA-seq