Author

Ximena Chirinos

University of OxfordORCID 0000-0001-6802-762XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Organism:Arabidopsis· 2 Research Focus:cell type annotation· 2 Research Focus:chromatin & epigenetic regulation· 2 Approach:experimental assay· 2 Assay:bulk RNA-seq· 1 Assay:ChIP-seq· 1 Approach:comparative / phylogenetic analysis· 1 Research Focus:development & morphogenesis· 1

Frequent Co-Authors

Francesco LicausiiD· 3 shared Emily FlashmaniD· 2 shared Mikel Lavilla-PuertaiD· 2 shared Vinay ShuklaiD· 2 shared Alessia Del Chiaro· 1 shared Alexander Ryder· 1 shared Ane Del Pozo Beltrán· 1 shared Angelika MustrophiD· 1 shared

Activity by Year

2025-2025 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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3 shared papersPlant Biology

Francesco LicausiORCID

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3 papers

Recent·Most cited

Plant BiologybioRxivPreprintNov 24, 2025

KDM7-mediated oxygen sensing reprograms chromatin to enhance hypoxia tolerance in the root

Daai Zhang, Ximena Chirinos, Alessia Del Chiaro…·Francesco Licausi

The paper shows that KDM7s act as oxygen sensors in Arabidopsis root tips, reprogramming chromatin to enhance hypoxia tolerance by increasing H3K4me3.

1 citation

ArabidopsisDNA methylation

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Plant BiologybioRxivPreprintSep 17, 2025

Anatomy and habitat shape the oxygen sensing machinery of angiosperms

Ximena Chirinos, Vinay Shukla, Mikel Lavilla-Puerta…·Francesco Licausi

The paper analyzes the evolution of oxygen sensing machinery in angiosperms, finding that habitat and anatomy shape diversification of Cys-NDP components while retaining a conserved transcriptional core.

2 citations

plant (other)bulk RNA-seq

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Plant BiologybioRxivPreprintJul 24, 2025

Manipulating plant oxygen sensing through NCO substitution reveals trade-offs between growth and flooding tolerance

Monica Perri, Yuming He, Ximena Chirinos…·Francesco Licausi

This study replaces Arabidopsis PCOs with NCOs from different species to show how enzyme activity affects hypoxia gene expression and submergence survival, but also impacts growth and biomass.

2 citations

Arabidopsisproteomics

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