Author

Alex K. Hu

Benaroya Research InstituteORCID 0000-0001-6846-1776Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Alex Hu1 paper · University of Washington

Biology Disciplines

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Immunology· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Organism:human· 2 Approach:statistical model· 2 Approach:deep learning· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:perturbation response prediction· 1 Research Focus:protein design· 1

Frequent Co-Authors

Cory L SimpsoniD· 1 shared Daniel J CampbelliD· 1 shared David A. HilliD· 1 shared Hakon H. HakonarsoniD· 1 shared Hannah A DeBergiD· 1 shared Hui‐Qi QuiD· 1 shared Jeff BilmesiD· 1 shared Jeffrey S CarliniD· 1 shared

Activity by Year

2018-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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1 shared paperImmunology

Cory L SimpsonORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

ImmunologybioRxivPreprintNov 6, 2026

Homeostatic fibroblast niche collapse in clinically uninvolved skin marks a pre-fibrotic stage of systemic sclerosis

Alex Hu, Lin Wei Tung, Thomas Pulliam…·Peter J Morawski

The paper identifies a pre-fibrotic stage in scleroderma by analyzing spatial transcriptomic changes in clinically uninvolved skin, showing early loss of fibroblast niches and vascular reprogramming.

DOI 10.64898/2026.11.05.764714

humanspatial transcriptomics

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ImmunologyJournal of Allergy and Clinical ImmunologyPeer-reviewedJan 31, 2025

Companion to: A molecular basis for milk allergen immune recognition in eosinophilic esophagitis

Julianna Dilollo, Alex K. Hu, Hui‐Qi Qu…·David A. Hill

This companion paper identifies a β-casein-specific TCR clonotype and its HLA restriction in a patient with EoE milk allergy, supporting findings from the parent study.

7 citationstop 4%

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BioinformaticsJournal of Proteome ResearchPeer-reviewedOct 17, 2018

Joint precursor elution profile inference via regression for peptide detection in data-independent acquisition mass spectra

Alex K. Hu, Yang Young Lu, Jeff Bilmes, William Stafford Noble

The paper introduces a regression model called Siren to improve peptide detection in DIA mass spectra by accounting for isotope peak interference.

6 citations

proteomicsstatistical model

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