Author

Richard Mustaklem

Indiana University IndianapolisORCID 0000-0001-6995-6375Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Research Focus:cell type annotation· 2 Organism:mouse· 2 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Research Focus:dimensionality reduction· 1 Approach:experimental assay· 1 Organism:human· 1

Frequent Co-Authors

Dominic J. AcriiD· 2 shared Holly N. KerseyiD· 2 shared Jungsu KimiD· 2 shared Kelly A. HartiganiD· 2 shared Luke Child DabiniD· 2 shared Jesse Raphael GibbsiD· 1 shared Jung Hyun ParkiD· 1 shared Jung Hyun ParkiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 41 mutual co-author links

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2 shared papersBioinformatics

Dominic J. AcriORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintAug 4, 2026

Semi-automated annotation refinement accelerates cell type identification in brain spatial and single-cell studies

Dominic J. Acri, Richard Mustaklem, Liam Horan-Portelance…·Jungsu Kim

SAHA provides a statistical framework for rapid cell type annotation by transferring labels from reference datasets to query datasets without integration.

DOI 10.64898/2026.07.30.741795

mousehuman

𝕏 PostBluesky

NeuroscienceCell Reports MethodsPeer-reviewedMar 1, 2026

Comparative analysis of nuclei isolation methods for brain single-nucleus RNA sequencing

Holly N. Kersey, Dominic J. Acri, Luke Child Dabin…·Jungsu Kim

This study compares three nuclei isolation methods for brain snRNA-seq, finding protocol-dependent differences in cell type proportions, transcriptional homogeneity, and RNA contamination levels.

9 citationstop 1%

mousesnRNA-seq

𝕏 PostBluesky