Author

Daniel Ross Bogema

University of Technology SydneyORCID 0000-0001-7013-7326Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genetics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Approach:statistical model· 2 Research Focus:database / resource· 1 Organism:E. coli· 1 Research Focus:phylogenetics / evolution· 1 Organism:plant (other)· 1 Research Focus:software / tool· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Aaron E. DarlingiD· 2 shared Steven Philip DjordjeviciD· 2 shared Adam Caprez· 1 shared Alex ReynoldsiD· 1 shared Alexander JungeiD· 1 shared Andreas SjödiniD· 1 shared Anthony BretaudeauiD· 1 shared Arne Kratz· 1 shared

Activity by Year

2018-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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2 shared papersGenetics

Aaron E. DarlingORCID

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3 papers

Recent·Most cited

GeneticsbioRxivPreprintNov 12, 2023

Xanthomonas rydalmerenesis sp. nov., a novel plant bacteria isolated from Fragaria x ananassa

Daniel J. E. McKnight, Johanna W.‐H. Wong‐Bajracharya, Efenaide B. Okoh…·Toni A. Chapman

The paper describes the isolation and characterization of five bacterial isolates from Fragaria x ananassa, identifying them as a new species of Xanthomonas, Xanthomonas rydalmerenesis, which is non-pathogenic.

DOI 10.1101/2023.11.12.566340

plant (other)statistical model

𝕏 PostBluesky

GenomicsMicrobial GenomicsPeer-reviewedFeb 27, 2019

Whole genome analysis of ExPEC ST73 from a single hospital over a 2-year period identified different circulating clonal groups

Daniel Ross Bogema, Jessica McKinnon, M. Liu…·Steven Philip Djordjevic

The paper analyzes whole-genome sequences of 16 ExPEC ST73 isolates from a single hospital to identify circulating clonal groups and their mobile genetic elements.

24 citations

E. coliwhole-genome sequencing

𝕏 PostBluesky

BioinformaticsNature MethodsPeer-reviewedJun 25, 2018

Bioconda: A sustainable and comprehensive software distribution for the life sciences

Björn Grüning, Ryan Dale, Andreas Sjödin…·Matthew L. Workentine

Bioconda provides a sustainable, comprehensive distribution of bioinformatics software using Conda for reproducible analysis across platforms.

1,653 citationstop 1%

experimental assaysoftware / tool

𝕏 PostBluesky