Author

Jake K. Soley

The University of MelbourneORCID 0000-0001-7131-2560Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Microbiology· 2

Signature Assays, Organisms & Methods

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Research Focus:drug response / drug discovery· 2 Assay:whole-genome sequencing· 2 Approach:deep learning· 1 Organism:E. coli· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Approach:statistical model· 1

Frequent Co-Authors

Benjamin P. HowdeniD· 1 shared Beverley J. IsherwoodiD· 1 shared Calum J. WalshiD· 1 shared Charlotte K. HindiD· 1 shared Danna R. GiffordiD· 1 shared Edward Hutchings· 1 shared Elena B. M. BreidensteiniD· 1 shared Esther SweeneyiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperMicrobiology

Benjamin P. HowdenORCID

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2 papers

Recent·Most cited

MicrobiologybioRxivPreprintSep 19, 2026

A panel of genotypically and phenotypically characterised WHO priority Gram-negative bacteria to facilitate antimicrobial and diagnostic development

Jake K. Soley, Shazad Mushtaq, Charlotte K. Hind…·Katie L. Hopkins

The paper constructs five panels of clinically relevant Gram-negative bacterial isolates to support antimicrobial and diagnostic development.

DOI 10.64898/2026.09.18.752562

humanwhole-genome sequencing

𝕏 PostBluesky

MicrobiologyNature CommunicationsPeer-reviewedJan 17, 2025

High-throughput method rapidly characterizes hundreds of novel antibiotic resistance mutations

Matthew J. Jago, Jake K. Soley, Stepan Denisov…·Mato Lagator

This paper introduces QMS-Seq, a high-throughput method to identify antibiotic resistance mutations in E. coli, revealing distinct mutation patterns for multi-drug and antibiotic-specific resistance.

21 citationstop 1%

E. coliwhole-genome sequencing

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