Author

Ziwen Liu

Chan Zuckerberg Biohub San FranciscoORCID 0000-0001-7482-1299Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 1 Cell Biology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:imaging· 3 Research Focus:benchmarking· 2 Approach:deep learning· 2 Organism:human· 2 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Carolina AriasiD· 3 shared Chad LiuiD· 3 shared Eduardo Hirata-MiyasakiiD· 3 shared Ivan E. IvanoviD· 3 shared Manuel D. LeonettiiD· 3 shared Shalin B. MehtaiD· 3 shared Talon ChandleriD· 3 shared Soorya PradeepiD· 2 shared

Activity by Year

2024-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersSystems Biology

Carolina AriasORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Systems BiologybioRxivPreprintAug 25, 2026

A multimodal perturbation atlas defines the phenotypic resolution of cellular morphology.

Chad Liu, Alexander V. Hillsley, Madhurya Sekhar…·Manuel D. Leonetti

The paper presents a multimodal perturbation atlas using CRISPR knockouts in A549 cells, combining microscopy, phase imaging, and scRNA-seq to assess phenotypic resolution.

2 citations

humanspatial transcriptomics

𝕏 PostBluesky

Cell BiologyPNAS NexusPeer-reviewedAug 9, 2024

Mantis: high-throughput 4D imaging and analysis of the molecular and physical architecture of cells

Ivan E. Ivanov, Eduardo Hirata-Miyasaki, Talon Chandler…·Shalin B. Mehta

The paper introduces Mantis, a high-throughput 4D microscope, and shrimPy, software for analyzing 4D data, to study cellular dynamics and responses to perturbations like viral infection.

22 citations

imagingmicroscopy & imaging analysis

𝕏 PostBluesky

BioinformaticsbioRxivPreprintMay 31, 2024

Robust virtual staining of landmark organelles

Ziwen Liu, Eduardo Hirata-Miyasaki, Soorya Pradeep…·Shalin B. Mehta

The paper develops robust virtual staining methods for cellular landmarks using deep learning, showing improved performance across cell types and imaging conditions.

6 citations

humanzebrafish

𝕏 PostBluesky