Author

Shira Weingarten-Gabbay

Broad InstituteORCID 0000-0001-7579-0236Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Assay:ChIP-seq· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Research Focus:drug response / drug discovery· 1 Research Focus:protein structure prediction· 1

Frequent Co-Authors

Adina WeinbergeriD· 1 shared Alexandra C. StantoniD· 1 shared Catherine A. FreijeiD· 1 shared Charles M. RiceiD· 1 shared Chloe K. BoehmiD· 1 shared Daniel LópeziD· 1 shared Eilon SharoniD· 1 shared Eran SegaliD· 1 shared

Activity by Year

2019-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperGenomics

Adina WeinbergerORCID

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2 papers

Recent·Most cited

Systems BiologySciencePeer-reviewedJun 12, 2025

Pan-viral ORFs discovery using Massively Parallel Ribosome Profiling

Shira Weingarten-Gabbay, Matthew R. Bauer, Alexandra C. Stanton…·Pardis Christine Sabeti

This study uses Massively Parallel Ribosome Profiling to identify thousands of viral ORFs, including non-canonical ones, and shows their impact on HLA-I peptides and protein synthesis regulation.

11 citations

humanRibo-seq

𝕏 PostBluesky

GenomicsGenome ResearchPeer-reviewedFeb 1, 2019

Deciphering Transcriptional Regulation of Human Core Promoters

Shira Weingarten-Gabbay, Ronit Nir, Shai Lubliner…·Eran Segal

The paper systematically assays core promoter elements to understand their role in transcriptional regulation and identifies key sequence features and spatial organization principles.

110 citations

humanDNA methylation

𝕏 PostBluesky