Dávid Fazekas

The paper models the impact of non-coding SNPs on gene regulatory networks in IBD to stratify patients based on gene dysregulation and therapeutic response.

This study evaluates four bioinformatic pipelines for assembling full-length viral genomes, finding that reference sequence similarity affects performance and that runtime and usability vary between tools.

AutophagyNet is an updated database providing curated interactions and annotations for autophagy proteins, enabling analysis of autophagy regulation across different contexts.

SalmoNet2 provides an updated multi-layered network resource for 20 Salmonella strains, enhancing strain comparisons through protein-protein, transcriptional regulatory, and metabolic interactions.

The paper introduces CausalTAB, an updated format for representing causal signaling interactions, enhancing the precision and coverage of signaling network modeling.

SignaFish provides a zebrafish-specific signaling pathway resource built on the SignaLink framework, offering curated and additional interactions for pathway analysis.