Zachary F. Hallberg

This study uses phage-based manipulation to reveal ecological interactions in gut microbiomes by targeting Escherichia fergusonii and analyzing its role in community dynamics.

This paper develops a method to disrupt specific microbial metabolic interactions by quenching corrinoids using BtuG, showing it blocks corrinoid-dependent growth and measures cobalamin release rates in a model bacterial coculture.

The paper investigates how corrinoid structure affects soil microbial community composition and stability through experimental and genomic analysis.

The paper trains a deep recurrent neural network to predict bacterial two-component signaling pairs, accurately recommending HK-RR pairs including orphans in Escherichia coli.