Author

Atsushi Okabe

Chiba UniversityORCID 0000-0001-7748-6078Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Approach:statistical model· 2 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1

Frequent Co-Authors

Atsushi KanedaiD· 2 shared Ai Katsuma· 1 shared Akihiro ItoiD· 1 shared Domenico AcciliiD· 1 shared Hiroaki TachiwanaiD· 1 shared Hiroshi KimurâiD· 1 shared Kohei KumegawaiD· 1 shared Masaki KatoiD· 1 shared

Activity by Year

2021-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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2 shared papersCancer Biology

Atsushi KanedaORCID

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2 papers

Recent·Most cited

Cancer BiologybioRxivPreprintJul 31, 2025

Breast cancer identity is defined by specialized enhancer sets via lysine deacetylation

Hiroaki Tachiwana, Kohei Kumegawa, Ryota Matsudo…·Noriko Saitoh

The paper identifies hypoacetylation-defined enhancers in luminal breast cancer cells and links them to subtype-specific gene regulation and patient classification.

DOI 10.1101/2025.07.31.668008

humanChIP-seq

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Molecular BiologyProceedings of the National Academy of SciencesPeer-reviewedNov 3, 2021

An integrative transcriptional logic model of hepatic insulin resistance

Takumi Kitamoto, Taiyi Kuo, Atsushi Okabe…·Domenico Accili

This paper investigates the transcriptional regulation of lipid and glucose metabolic genes in hepatic insulin resistance, finding distinct regulatory patterns and a model for their coexistence in type 2 diabetes.

21 citations

humanbulk RNA-seq

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