Author

Jan Christian Kässens

University Hospital Schleswig-HolsteinORCID 0000-0001-7840-1160Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Cancer Biology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1

Frequent Co-Authors

Alina HartmanniD· 1 shared André FrankeiD· 1 shared Anjali CremeriD· 1 shared Björn-Thore HanseniD· 1 shared Christoph Prieß· 1 shared Claudia Dorothea BaldusiD· 1 shared Claudia HaferlachiD· 1 shared David EllinghausiD· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperCancer Biology

Alina HartmannORCID

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2 papers

Recent·Most cited

Cancer BiologyHemaSpherePeer-reviewedApr 1, 2026

IntegrateALL: an end-to-end RNA-seq analysis pipeline for multilevel data extraction and interpretable subtype classification in B-precursor ALL

Nadine Wolgast, Thomas Beder, Mayukh Mondal…·Lorenz Bastian

IntegrateALL is an RNA-seq pipeline that integrates expression-based subtyping, gene fusion detection, and virtual karyotyping to classify B-ALL with high accuracy.

1 citation

humanbulk RNA-seq

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BioinformaticsbioRxivPreprintFeb 24, 2022

EagleImp-Web: A Fast and Secure Genotype Phasing and Imputation Web Service using Field-Programmable Gate Arrays

Lars Wienbrandt, Christoph Prieß, Jan Christian Kässens…·David Ellinghaus

EagleImp-Web provides a fast, secure web service for genotype phasing and imputation using FPGA acceleration and transparent algorithms.

1 citation

whole-genome sequencingexperimental assay

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