Natalia Tichshenko

Scop3P-Toolkit provides an open-source framework for integrating PTMs, mutations, and proteomics data with structural and functional annotations to enable reproducible analysis.

Scop3P is updated to integrate phosphorylation sites with structural, functional, and mutational data, enhancing phosphosite interpretation and disease context.

MoDPA infers modification-dependent protein associations from reprocessed mass spectrometry data, identifying clusters of modified proteins involved in specific biological pathways.

ionbot improves peptide identification in mass spectrometry by integrating machine learning and open modification searches, increasing PSM confidence and identification rates.

Scop3P provides a comprehensive database of human phosphosites with structural and biophysical context, integrating sequence, structure, and phosphoproteomics data.