Kevin Velghe

Scop3P is updated to integrate phosphorylation sites with structural, functional, and mutational data, enhancing phosphosite interpretation and disease context.

The paper presents the E. coli PeptideAtlas build, a comprehensive pan-proteome resource covering 4,755 proteins and over 10,000 PTM sites from 40 datasets.

MoDPA infers modification-dependent protein associations from reprocessed mass spectrometry data, identifying clusters of modified proteins involved in specific biological pathways.

ProteoBench provides a centralized platform for comparing proteomics data analysis workflows, enabling benchmarking and community collaboration.

DeepLC uses transfer learning to improve LC retention time prediction across different experimental setups and peptide modifications.

ionbot improves peptide identification in mass spectrometry by integrating machine learning and open modification searches, increasing PSM confidence and identification rates.