Author

Patricia C. Galipeau

Fred Hutch Cancer CenterORCID 0000-0001-7961-7430Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 3 Approach:statistical model· 3 Assay:whole-genome sequencing· 3 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:drug response / drug discovery· 1 Research Focus:gene regulatory network inference· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Brian J. ReidiD· 2 shared Carissa A. SancheziD· 2 shared Thomas G. PaulsoniD· 2 shared Xiaohong LiiD· 2 shared A. Patrick McDeediD· 1 shared Aditya Pawar· 1 shared Aditya S. DeshpandeiD· 1 shared Akira Nair· 1 shared

Activity by Year

2019-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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2 shared papersGenomics

Brian J. ReidORCID

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3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintAug 28, 2026

Gene expression inference from cell-free DNA using uncertainty-aware deep learning

Robert D. Patton, A. Patrick McDeed, Alexander Netzley…·Gavin Ha

This paper develops a deep learning framework to infer gene expression from cell-free DNA, improving reliability and enabling functional genomics in precision oncology.

DOI 10.64898/2026.02.10.705188

humanwhole-genome sequencing

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GenomicsbioRxivPreprintJul 25, 2022

Extrachromosomal DNA in the cancerous transformation of Barrett's esophagus

Jens Luebeck, Alvin Wei Tian Ng, Patricia C. Galipeau…·Paul S. Mischel

The paper investigates the development and evolution of extrachromosomal DNA (ecDNA) in Barrett's esophagus patients progressing to esophageal adenocarcinoma, finding ecDNA is strongly associated with cancer progression and enriched for oncogenes and immunomodulatory genes.

DOI 10.1101/2022.07.25.501144

humanwhole-genome sequencing

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GenomicsbioRxivPreprintNov 12, 2019

Novel patterns of complex structural variation revealed across thousands of cancer genome graphs

Kevin Hadi, Xiaotong Yao, Julie M. Behr…·Marcin B. Imielinski

The paper identifies three novel complex structural variation patterns in cancer genomes using genome graph analysis across 2,833 tumor WGS.

14 citations

humanwhole-genome sequencing

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