Author

Julie M. Behr

New York Genome CenterORCID 0000-0001-8601-4902Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 4 Research Focus:variant calling· 4 Assay:whole-genome sequencing· 4 Approach:experimental assay· 2 Research Focus:genome assembly· 2 Approach:statistical model· 2 Research Focus:gene regulatory network inference· 1 Assay:long-read sequencing· 1

Frequent Co-Authors

Huasong TianiD· 4 shared Marcin B. ImielinskiiD· 4 shared Aditya S. DeshpandeiD· 3 shared Joel A. RosieneiD· 3 shared Titia de LangeiD· 3 shared Xiaotong YaoiD· 3 shared David C. WilkesiD· 2 shared Emily M. AdneyiD· 2 shared

Activity by Year

2019-2021 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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4 shared papersGenomics

Huasong TianORCID

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4 papers

Recent·Most cited

Loose ends in cancer genome structure

Julie M. Behr, Xiaotong Yao, Kevin Hadi, Huasong Tian, Aditya S. Deshpande, Joel A. Rosiene, Titia de Lange, Marcin B. Imielinski

The paper identifies 'loose ends' in cancer genomes, structural variations missed by short-read WGS, and estimates they account for <3% of large-scale structural variation.

bioRxiv · May 26, 2021 · PreprintGenomics

Structural variant evolution after telomere crisis

Sally M. Dewhurst, Xiaotong Yao, Joel A. Rosiene, Huasong Tian, Julie M. Behr, Nazario Bosco, Kaori Takai, Titia de Lange, Marcin B. Imielinski

The paper investigates structural variants (SVs) generated during telomere crisis, showing that BFB cycles and chromothripsis can occur in clones that escape telomere crisis.

Nature Communications · Apr 7, 2021Peer-reviewedGenomics

Novel patterns of complex structural variation revealed across thousands of cancer genome graphs

Kevin Hadi, Xiaotong Yao, Julie M. Behr, Aditya S. Deshpande, Charalampos Xanthopoulakis, Joel A. Rosiene, Madison Darmofal, Huasong Tian, Joseph DeRose, Rick Mortensen, Emily M. Adney, Zoran Z. Gajic, Kenneth Eng, Jeremiah A. Wala, Kazimierz O. Wrzeszczyński, , Marcin B. Imielinski

The paper identifies three novel complex structural variation patterns in cancer genomes using genome graph analysis across 2,833 tumor WGS.

bioRxiv · Nov 12, 2019 · PreprintGenomics

Nanopore sequencing of DNA concatemers reveals higher-order features of chromatin structure

Netha Ulahannan, Matthew Pendleton, Aditya S. Deshpande, Stefan Schwenk, Julie M. Behr, Xiaoguang Dai, Carly Tyer, Priyesh Rughani, Sarah Kudman, Emily M. Adney, Huasong Tian, David C. Wilkes, Juan Miguel Mosquera, David Stoddart, Dann Turner, , Marcin B. Imielinski

Pore-C reads multi-way chromatin contacts directly off unamplified Nanopore long reads, recovering Hi-C-scale features while also resolving rearranged cancer alleles and supporting de novo assembly.

bioRxiv · Nov 7, 2019 · PreprintGenomics