Shanlin Liu

This paper retrieves ancient enamel protein sequences from a 21-24 Ma rhinocerotid, providing new phylogenetic insights into Rhinocerotidae diversification during the middle Eocene-Oligocene.

This study investigates the genomic basis of invasion in the sycamore lace bug, identifying adaptation signatures and invasion routes through genomic analysis.

eProbe designs capture probes for aeDNA to improve genetic analysis by significantly increasing target taxa recovery and genome coverage.

This study uses phylogenomic data to reconstruct the evolutionary history of caddisflies, finding that portable case-making evolved independently in three lineages.

NextPolish2 improves genome accuracy by fixing base errors in HiFi assemblies without overcorrections or haplotype switch errors.

This study reveals deep genetic differentiation in Malayan pangolins, identifies two new genetic populations, and proposes a new species closely related to the Philippine pangolin.

This study compares genome assemblies from Pacbio HiFi and Oxford Nanopore ultralong reads in rice, finding that ONT provides better contiguity but more errors, while PB offers fewer errors but lower contiguity.

The paper sequenced two ichneumonid wasp genomes to reveal distinct genomic architectures of endogenous ichnoviruses compared to bracoviruses.

MitoZ is a toolkit for mitochondrial genome assembly, annotation, and visualization that outperforms existing tools in accuracy and completeness.

The paper introduces a high-throughput sequencing approach to efficiently generate full-length COI barcodes using SE400 data, achieving high accuracy in species identification.

This study uses Early Pleistocene dental enamel proteome sequences to resolve the phylogeny of Stephanorhinus, showing it is paraphyletic and requiring systematic revision.