Chentao Yang

This paper uses fusion gene occurrence spectra to infer chromosome spatial structures and their universality across tissues.

PanSVmerger reduces redundant multiallelic structural variants in pangenome graphs with minimal loss of sensitivity, improving precision and F1-score.

The paper presents 320 nearly-complete East Asian genome assemblies, revealing new genetic diversity and structural variations not present in existing global pangenomes.

Bamsnap-LRS automates batch visualization of long-read sequencing alignments, supporting genomic, transcriptomic, and haplotype-aware analyses with publication-ready figure generation.

The paper develops a method to detect and analyze NUMTs in human and non-human primate genomes, revealing their genomic features, population dynamics, and evolutionary implications.

The paper introduces CycSim, a context-aware simulator for long-read mapping that improves parameter optimization, achieving faster mapping and better accuracy across different sequencing platforms.

The paper presents haplotype-resolved T2T assemblies of two MZ twins, revealing genomic and epigenetic divergence, including structural variation and DNA methylation differences.

This study analyzes rice centromeres to understand their genetic diversity and evolution, finding that structural variations and retrotransposon insertions drive centromere innovation.

This study presents genome assemblies and analyses of macaques to explore genetic variation, population history, and evolutionary differences between species and humans.

The paper constructs a near-complete genome assembly for the bearded dragon Pogona vitticeps and characterizes the Z sex chromosome, identifying key genes involved in sex determination.

GCI evaluates genome assembly continuity at single nucleotide resolution to determine how close an assembly is to T2T standards.

This paper introduces an improved nanopore sequencing platform called CycloneSEQ, demonstrating long-duration sequencing and high yield with applications in genomics.

This paper presents a haplotype-resolved genome assembly of the Nile rat, revealing unique genomic features relevant to type 2 diabetes and metabolic dysfunctions.

The paper evaluates sequencing and assembly methods to create high-quality diploid human genome assemblies, finding that long reads and haplotype sorting improve accuracy and completeness.

MitoZ is a toolkit for mitochondrial genome assembly, annotation, and visualization that outperforms existing tools in accuracy and completeness.

The paper introduces a high-throughput sequencing approach to efficiently generate full-length COI barcodes using SE400 data, achieving high accuracy in species identification.