Author

Stefan Phelan

Nanostring Technologies (United States)ORCID 0000-0001-8279-6409Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Assay:spatial transcriptomics· 2 Approach:statistical model· 2 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1

Frequent Co-Authors

Adam L. Essene· 1 shared Alex K. ShalekiD· 1 shared Alexander SturmiD· 1 shared Alexandra–Chloé VillaniiD· 1 shared Alison VanSchoiackiD· 1 shared Amit Dipak AminiD· 1 shared Andriy Myloserdnyy· 1 shared Andy NamiD· 1 shared

Activity by Year

2022-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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1 shared paperGenomics

Adam L. Essene

Mutual co-authors in cluster

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2 papers

Recent·Most cited

GenomicsGenome biologyPeer-reviewedMar 14, 2025

A single-nucleus and spatial transcriptomic atlas of the COVID-19 liver reveals topological, functional, and regenerative organ disruption in patients

Yered H. Pita-Juárez, Dimitra Karagkouni, Nikolaos Kalavros…·Ioannis S. Vlachos

This study creates a single-nucleus and spatial transcriptomic atlas of the COVID-19 liver, revealing cellular and functional disruptions associated with organ damage.

22 citations

humanscRNA-seq

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NeurosciencebioRxivPreprintJan 26, 2022

Upregulation of Trem2 expression occurs exclusively on microglial contact with plaques

Jack I. Wood, Eugenia Wong, Ridwaan Joghee…·Frances A. Edwards

The paper shows that Trem2 gene expression in microglia is upregulated only when they contact plaques, and this effect is reduced by the Trem2R47H mutation.

DOI 10.1101/2022.01.26.477873

mousespatial transcriptomics

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