Paulino Martı́nez

The paper designs and validates a 63K SNP array for two clam species to support population genetics and breeding programs.

This paper presents the first comprehensive pangenome analysis of Vibrio europaeus, revealing its evolutionary history, functional gene distribution, and genomic variability across strains from aquaculture facilities.

The paper compares immune responses to viral and bacterial stimuli in three bony fish species using transcriptomic analysis, identifying conserved gene expression patterns and pathways.

This study characterizes the expanded olfactory receptor gene repertoire in Senegalese sole, identifying 455 genes and showing functional expression through transcriptome analysis.

The paper uses single-nuclei RNA sequencing to analyze gonadal tissue from captive-bred and wild-bred male Senegalese sole, identifying impaired Sertoli-spermatogonia interactions as a cause of reduced sperm production and infertility.

KLinterSel evaluates concordance among selective sweep detection methods using statistical tests and identifies candidate site clusters in common cockle genomic data.

The paper identifies and analyzes chromosomal inversions in the flat oyster, showing their role in adaptation and phylogeography through genomic and population studies.

The paper generates a full-length transcriptome of the olfactory rosette in Senegalese sole, identifying known and novel transcripts to support reproductive management in aquaculture.

The paper integrates multi-omics data to study the epigenomic and transcriptomic responses to viral and bacterial stimulation in turbot, identifying gene regulation patterns and chromatin state changes.

This study creates a comprehensive epigenomic atlas of turbot embryogenesis, revealing chromatin dynamics and regulatory elements important for development and aquaculture.

This study shows that exposing male rabbits to biological secretions like doe urine or vaginal swabs improves sperm motility and quality, but not testosterone levels.

This study examines how sex separation affects gene expression in the rabbit vomeronasal organ, revealing sex- and stage-specific plasticity in response to environmental changes.

The paper characterizes the transcriptome of the common cockle after exposure to Marteilia cochillia, identifying differentially expressed genes and their molecular functions related to immune response.

This study identifies a major QTL for shell colour variation in common cockles using GWAS and a high-density genetic map, linking it to candidate genes involved in shell architecture and local adaptation.

The paper presents a chromosome-level genome assembly for Senegalese sole, identifies the follicle stimulating hormone receptor (fshr) as the master sex determining gene, and shows its differential expression and allelic variation between sexes.

This paper provides the first comprehensive RNA-seq analysis of the rabbit vomeronasal organ transcriptome, revealing age- and function-dependent gene expression patterns.

The paper examines how environmental factors shape the genome of cockles in the Northeast Atlantic, identifying genetic structure and environmental drivers of divergence.

The paper identifies sox2 as the main driver of the ZW/ZZ sex-determining system in turbot through genetic and genomic analyses.