Manu Kumar Gundappa

The paper generates high-quality genome assemblies for two manta and devil ray species and identifies structural variations linked to pelagic adaptation.

The paper analyzes a duplicate-resolved paddlefish genome to study rediploidisation and Hox cluster evolution, finding links between genome rearrangements, 3D architecture, and rediploidisation timing.

This paper presents a high-quality genome assembly and tissue expression atlas for the European lobster, along with divergence time estimates and gene duplication analyses related to immunity and longevity.

The paper compares immune responses to viral and bacterial stimuli in three bony fish species using transcriptomic analysis, identifying conserved gene expression patterns and pathways.

The paper studies gene regulatory evolution in salmonids after autotetraploidization, finding that it is influenced by developmental and tissue-specific factors, with constraints at advanced embryogenesis.

This paper discusses the adoption of Nextflow and nf-core frameworks to standardize bioinformatics pipelines, improving collaboration and interoperability across research communities.

The paper imputes SNVs and SVs from low-coverage WGS data in Atlantic salmon, showing improved accuracy with SV genotype likelihoods.

The paper presents a chromosome-level reference genome for the European flat oyster, enabling high-resolution genomics for conservation and aquaculture.

This study evaluates genomic selection for improving growth traits in European flat oysters using low-density SNP panels and finds that similar prediction accuracies can be achieved with fewer markers.

This study reconstructs genome-wide rediploidization after autopolyploidization in salmonids over 100 million years, showing two waves of rediploidization and lineage-specific ohnologue divergence.

This study identifies 15,483 high-confidence structural variants in 492 Atlantic salmon genomes, revealing their role in population structure, functional impact, and domestication traits.

The paper proposes LORe as a model explaining delayed rediploidization and its impact on salmonid evolution, showing lineage-specific ohnologue divergence and functional adaptation.