Shan Wu

This study constructs a watermelon super-pangenome from 138 genomes, identifies over a million structural variants, and develops genomic prediction models for 18 traits to advance precision breeding.

The paper constructs a cucumber pangenome to analyze structural variant dynamics during domestication and breeding, finding SVs are purged more than SNPs and improving genomic prediction accuracy.

This study presents a phased chromosome-level genome assembly of sweetpotato, revealing its origin from a wild tetraploid relative and identifying genetic relationships with other progenitors.

This study presents a haplotype-resolved genome assembly and variation map of Rosa hybrida, revealing domestication history and genetic contributions from wild species.

The paper identifies genes associated with abiotic stress tolerance in sweetpotato using weighted gene co-expression network analysis and finds shared and unique transcriptional responses to heat, salt, and drought stresses.

The paper presents a high-quality genome of Solanum pimpinellifolium and identifies structural variants that underlie important tomato breeding traits.

This paper develops a method to assemble whole-chromosome pseudomolecules for polyploid plant genomes using genotyping-by-sequencing and reference genome data, showing improved accuracy over existing tools.

The paper presents the first high-quality draft genome of pomegranate, providing insights into fruit quality traits and ovule development.

This study reports high-quality genome sequences of C. maxima and C. moschata, revealing an allotetraploidization event and long-term karyotype stability in Cucurbita genomes.