Author

Siamak Yousefi

University of Tennessee Health Science CenterORCID 0000-0001-8633-5730Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Scientific Communication & Education· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:batch correction / integration· 1 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Organism:human· 1 Approach:large language model· 1 Organism:mouse· 1

Frequent Co-Authors

Robert W. WilliamsiD· 2 shared Adrian Kibet· 1 shared Alexander Kabui· 1 shared Andrea GuarracinoiD· 1 shared Arthur G. CentenoiD· 1 shared Arun IsaaciD· 1 shared Brian Muhia· 1 shared Bryan William JonesiD· 1 shared

Activity by Year

2020-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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2 shared papersScientific Communication & Education

Robert W. WilliamsORCID

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2 papers

Recent·Most cited

Scientific Communication & EducationOpen Research AfricaPeer-reviewedSep 2, 2025

✦ In-depth digest

Creating a biomedical knowledge base by addressing GPT inaccurate responses and benchmarking context

Shelby S. Darnell, Rupert W. Overall, Andrea Guarracino…·Pjotr Prins

GNQA, a retrieval-augmented GPT question-answering system over 3000 GeneNetwork, aging and diabetes papers, cites source paragraphs; RAGAS rated answer relevance above human thumbs-up ratings (89% vs 76%).

5 citations

humanmouse

𝕏 PostBluesky

BioinformaticsbioRxivPreprintJul 15, 2020

Computational approaches towards reducing contamination in single-cell RNA-seq data

Siamak Yousefi, Hao Chen, Jesse F. Ingels…·Robert W. Williams

The paper presents two computational methods to reduce contamination in single-cell RNA-seq data, improving clustering and biological interpretation.

DOI 10.1101/2020.07.15.205062

scRNA-seqstatistical model

𝕏 PostBluesky