Author

Yoshikazu Nakamura

Tokyo University of ScienceORCID 0000-0001-8763-0424Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Biochemistry· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Research Focus:cell-cell communication· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Organism:mouse· 1 Assay:proteomics· 1

Frequent Co-Authors

Kazuteru Aoki· 2 shared Michiaki HamadaiD· 2 shared Tatsuo AdachiiD· 2 shared Akari HagiwaraiD· 1 shared Akira Katayanagi· 1 shared Aya Yokota· 1 shared Fusui Oka· 1 shared Hidehito Yoshihara· 1 shared

Activity by Year

2020-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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2 shared papersBioinformatics

Kazuteru Aoki

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

PLCXD2 preferentially hydrolyzes phosphatidylinositol and supports retinal lipid homeostasis and photoreceptor integrity

Kaori Kanemaru, Wako Iwata, Akira Katayanagi, Fusui Oka, Yuto Kikuchi, Nozomu Kono, Hyeon‐Cheol Lee, Hideto Osada, Hiroaki Kajiho, Junya Hasegawa, Shin Morioka, Junko Sasaki, Akari Hagiwara, Norimitsu Ban, Junken Aoki, , Yoshikazu Nakamura

This study identifies PLCXD2 as a phosphatidylinositol-preferring phospholipase that maintains retinal lipid homeostasis and photoreceptor integrity.

bioRxiv · Sep 18, 2026 · PreprintBiochemistry

RaptGen: A variational autoencoder with profile hidden Markov model for generative aptamer discovery

Natsuki Iwano, Tatsuo Adachi, Kazuteru Aoki, Yoshikazu Nakamura, Michiaki Hamada

RaptGen generates aptamers using a variational autoencoder with a profile hidden Markov model decoder, showing effectiveness in creating novel sequences not present in training data.

bioRxiv · Feb 17, 2021 · PreprintBioinformatics

RaptRanker: in silico RNA aptamer selection from HT-SELEX experiment based on local sequence and structure information

Ryoga Ishida, Tatsuo Adachi, Aya Yokota, Hidehito Yoshihara, Kazuteru Aoki, Yoshikazu Nakamura, Michiaki Hamada

RaptRanker ranks RNA aptamers from HT-SELEX data using sequence and structure features, outperforming existing methods in identifying high-affinity candidates.

Nucleic Acids Research · May 27, 2020Peer-reviewedBioinformatics