Author

Ibrahim Al Bakir

Queen Mary University of LondonORCID 0000-0001-8775-3459Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Organism:human· 2 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Research Focus:differential expression· 1 Approach:machine learning (classical)· 1 Research Focus:software / tool· 1 Approach:statistical model· 1

Frequent Co-Authors

Eszter LakatosiD· 2 shared Qingli GuoiD· 2 shared Trevor A. GrahamiD· 2 shared Ville MustoneniD· 2 shared Andrea SottorivaiD· 1 shared Ann‐Marie BakeriD· 1 shared Christine S. Hughes· 1 shared Heather E. GrantiD· 1 shared

Activity by Year

2022-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBioinformatics

Eszter LakatosORCID

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2 papers

Recent·Most cited

Long deletion signatures in repetitive genomic regions track somatic evolution and enable sensitive detection of microsatellite instability

Qingli Guo, Jacob Househam, Eszter Lakatos, Salpie Nowinski, Ibrahim Al Bakir, Heather E. Grant, Vickna Balarajah, Christine S. Hughes, Luis Zapata, Hemant Mahendrakumar Kocher, Andrea Sottoriva, Ann‐Marie Baker, Ville Mustonen, Trevor A. Graham

This paper identifies long deletion signatures in repetitive regions as markers of microsatellite instability and develops a classifier to detect MSI in low-quality sequencing data.

bioRxiv · Oct 3, 2024 · PreprintBioinformatics

The mutational signatures of formalin fixation on the human genome

Qingli Guo, Eszter Lakatos, Ibrahim Al Bakir, Kit Curtius, Trevor A. Graham, Ville Mustonen

This paper identifies mutational signatures caused by formalin fixation and introduces FFPEsig, a method to correct these artefacts in genome sequencing data.

Nature Communications · Sep 6, 2022Peer-reviewedBioinformatics