Author

Salpie Nowinski

Institute of Cancer ResearchORCID 0000-0001-5686-3778Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 1 Genetic & Genomic Medicine· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:human· 2 Research Focus:variant calling· 2 Research Focus:benchmarking· 1 Research Focus:differential expression· 1 Approach:machine learning (classical)· 1 Approach:statistical model· 1 Assay:whole-exome sequencing· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Abeer M. ShaabaniD· 1 shared Ahmed A. AhmediD· 1 shared Alastair Mark ThompsoniD· 1 shared Alexandra W. van den Belt‐DuseboutiD· 1 shared Anargyros MegaliosiD· 1 shared Andrea SottorivaiD· 1 shared Angelo FortunatoiD· 1 shared Anita E. GrigoriadisiD· 1 shared

Activity by Year

2022-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperGenetic & Genomic Medicine

Abeer M. ShaabanORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Long deletion signatures in repetitive genomic regions track somatic evolution and enable sensitive detection of microsatellite instability

Qingli Guo, Jacob Househam, Eszter Lakatos, Salpie Nowinski, Ibrahim Al Bakir, Heather E. Grant, Vickna Balarajah, Christine S. Hughes, Luis Zapata, Hemant Mahendrakumar Kocher, Andrea Sottoriva, Ann‐Marie Baker, Ville Mustonen, Trevor A. Graham

This paper identifies long deletion signatures in repetitive regions as markers of microsatellite instability and develops a classifier to detect MSI in low-quality sequencing data.

bioRxiv · Oct 3, 2024 · PreprintBioinformatics

Genomic profiling defines variable clonal relatedness between invasive breast cancer and primary ductal carcinoma in situ

Esther H. Lips, Tapsi Kumar, Anargyros Megalios, Lindy L. Visser, Michael Sheinman, Angelo Fortunato, Vandna Shah, Marlous Hoogstraat, Emi Sei, Diego Mallo, Maria Roman-Escorza, Ahmed A. Ahmed, Mingchu Xu, Alexandra W. van den Belt‐Dusebout, Wim Brugman, , Elinor J. Sawyer

The paper uses genomic profiling to show that some invasive breast cancers are clonally unrelated to their preceding DCIS, suggesting DCIS may act as both a precursor and independent risk factor.

Nature Genetics · Jun 1, 2022Peer-reviewedGenetic & Genomic Medicine