Thomas James Ellis

The paper introduces a method to quantify pleiotropy and genotype-by-environment interactions and provides an R package for implementation.

The paper identifies and addresses cytosine-conversion errors in bisulphite sequencing caused by transposase activity, providing a Python package to correct these errors.

The paper develops genomic resources to improve American chestnut resistance to pathogens through breeding and gene editing.

The study compares adaptation to soil type and climate in two Arabidopsis thaliana populations, finding that soil adaptation contributes little to overall adaptive differentiation.

The paper identifies a genetic region associated with systemic necrosis in Arabidopsis thaliana infected with turnip mosaic virus, showing a trade-off between resistance and fitness costs.