Author

Philipp A. Geiger

Translational Genomics Research InstituteORCID 0000-0001-8964-8388Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Approach:statistical model· 2 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Jonathan R. Adkins· 2 shared Shobana SekariD· 2 shared Winnie S. LiangiD· 2 shared Erica E. TassoneiD· 1 shared Geidy E. SerranoiD· 1 shared Lori Cuyugan· 1 shared Thomas G. BeachiD· 1 shared

Activity by Year

2018-2020 · peak 1/yr

Co-Author Collaboration Network

7 top collaborators · 18 mutual co-author links

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2 shared papersBioinformatics

Jonathan R. Adkins

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2 papers

Recent·Most cited

BioinformaticsBiology Methods and ProtocolsPeer-reviewedJan 1, 2020

ACValidator: a novel assembly-based approach for in silico validation of circular RNAs

Shobana Sekar, Philipp A. Geiger, Jonathan R. Adkins…·Winnie S. Liang

ACValidator validates circRNAs by assembling reads around junctions and aligning contigs to detect back-spliced junctions, achieving high sensitivity and specificity in simulated and experimental datasets.

5 citations

bulk RNA-seqstatistical model

𝕏 PostBluesky

NeuroscienceBMC GenomicsPeer-reviewedMay 8, 2018

Circular RNA expression and regulatory network prediction in posterior cingulate astrocytes in elderly subjects

Shobana Sekar, Lori Cuyugan, Jonathan R. Adkins…·Winnie S. Liang

The paper identifies circRNAs and their regulatory networks in posterior cingulate astrocytes from elderly subjects, finding enriched immune response pathways.

36 citations

humanbulk RNA-seq

𝕏 PostBluesky