Muhammad Yasir

This paper uses ICA to analyze TraDIS-Xpress data from E. coli, identifying functional modules of antimicrobial resistance genes across multiple stress conditions.

This study identifies genes critical for Pseudomonas aeruginosa biofilm survival under ciprofloxacin exposure, revealing key pathways and potential therapeutic targets.

The paper reports genome sequences of ten multidrug-resistant Escherichia coli strains from Egyptian children with diarrhoea, identifying resistance genes and high-risk clones.

This study identifies staphylopine as essential for Staphylococcus epidermidis survival in human synovial fluid using transposon mutagenesis and RNAseq.

The paper investigates how tazobactam affects multidrug resistance in E. coli and Klebsiella pneumoniae using transposon mutagenesis, finding it selects for efflux pumps and membrane permeability changes.

This study identifies the target pathway of a novel antimicrobial compound and discovers synergies with existing antibiotics using genome-wide screening in Gram-negative bacteria.

LoRTIS-SS enables transposon insertion site mapping using long-read sequencing, improving accuracy in repeated genomic regions compared to short-read methods.

The paper identifies temporally essential genes for biofilm formation in E. coli using transposon mutagenesis and validates their roles at different stages of biofilm development.

AlbaTraDIS analyzes transposon mutagenesis data to identify genes involved in stress survival, demonstrating its utility in identifying Triclosan resistance genes in E. coli.