Author

Joydeb Sinha

Stanford UniversityORCID 0000-0001-9124-8199Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Assay:ATAC-seq· 1 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1 Research Focus:differential expression· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Lacramioara BintuiD· 3 shared Adi Xiyal MukundiD· 2 shared Connor LudwigiD· 2 shared Michaela M. HinksiD· 2 shared Taihei FujimoriiD· 2 shared Abby R. ThurmiD· 1 shared Alistair Nicol BoettigeriD· 1 shared Antonina HafneriD· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 35 mutual co-author links

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3 shared papersSynthetic Biology

Lacramioara BintuORCID

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3 papers

Recent·Most cited

GeneticsScience AdvancesPeer-reviewedJul 23, 2026

Single-cell chromatin state transitions during epigenetic memory formation

Taihei Fujimori, Abby R. Thurm, Simon Gaudin…·Lacramioara Bintu

The paper investigates chromatin state transitions during epigenetic memory formation by analyzing single-cell gene expression and chromatin structure changes after repressor recruitment and release.

11 citations

ATAC-seqscRNA-seq

𝕏 PostBluesky

Synthetic BiologyCell SystemsPeer-reviewedAug 4, 2023

High-throughput functional characterization of combinations of transcriptional activators and repressors

Adi Xiyal Mukund, Josh Tycko, Sage J. Allen…·Lacramioara Bintu

The paper measures how combinations of transcriptional activators and repressors affect gene expression and uses this to create a tunable synthetic transcription factor.

41 citationstop 5%

humanexperimental assay

𝕏 PostBluesky

Synthetic BiologyeLifePeer-reviewedApr 22, 2022

Dynamic spreading of chromatin-mediated gene silencing and reactivation between neighboring genes in single cells

Sarah Lensch, Michael H. Herschl, Connor Ludwig…·Lacramioara Bintu

The paper studies how gene silencing and reactivation spread between neighboring genes in single cells, finding different dynamics based on chromatin regulators and insulator elements.

37 citations

humanChIP-seq

𝕏 PostBluesky