Antonina Hafner

The paper investigates chromatin state transitions during epigenetic memory formation by analyzing single-cell gene expression and chromatin structure changes after repressor recruitment and release.

Epiregulon infers single-cell TF activity using ATAC-seq and RNA-seq to predict drug response and identify drivers of cell state.

The paper maps single-cell super-enhancer interactomes, revealing that SEs form loose communities linked to transcriptional bursts.

SnapFISH identifies chromatin loops from multiplexed DNA FISH data with high sensitivity and accuracy in mouse embryonic stem cells.

This study shows that the BAF complex both antagonizes and promotes polycomb-mediated repression by redistributing polycomb complexes across the genome in embryonic stem cells.

The paper identifies universal and cell type specific p53 DNA binding sites by analyzing 12 epithelial cell lines after ionizing radiation.