Author

Joop H. Jansen

Radboud University Medical CenterORCID 0000-0001-9459-568XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Developmental Biology· 1 Genomics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:differential expression· 2 Assay:DNA methylation· 2 Organism:mouse· 2 Approach:benchmark study· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Approach:experimental assay· 1

Frequent Co-Authors

Hendrik MarksiD· 2 shared Nick G.P. BoveeiD· 2 shared Agnes J. VialeiD· 1 shared Akifumi Takaori‐KondoiD· 1 shared Alexandra G. SmithiD· 1 shared Andrea F. Lopez‐ClavijoiD· 1 shared Andrea PellagattiiD· 1 shared Araxe Sarian· 1 shared

Activity by Year

2020-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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2 shared papersDevelopmental Biology

Hendrik MarksORCID

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3 papers

Recent·Most cited

Developmental BiologyCell ReportsPeer-reviewedDec 1, 2025

The exit of naïve pluripotency contains a lipid metabolism-induced checkpoint for genome integrity.

Roshni A. de Souza, David Barneda, Donja Karimlou…·Véronique Azuara

The paper identifies a lipid metabolism-induced checkpoint during the exit of naïve pluripotency that ensures genome integrity through telomere regulation.

DOI 10.1016/j.celrep.2025.116654

mousebulk RNA-seq

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Molecular BiologybioRxivPreprintJun 18, 2025

Methylome profiling of SetDB1 deficient ESCs reveals diverse epigenetic cross-talk during pluripotency

Nick G.P. Bovee, Stefan H. A. Hoogland, Ehsan Habibi…·Hendrik Marks

This study investigates DNA methylation changes in SetDB1-deficient mouse ESCs, revealing its role in silencing retrotransposons and imprinted regions through coordination with H3K9me3.

DOI 10.1101/2025.06.18.660343

mouseDNA methylation

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GenomicsNature MedicinePeer-reviewedAug 3, 2020

Implications of TP53 Allelic State for Genome Stability, Clinical Presentation and Outcomes in Myelodysplastic Syndromes

Elsa Bernard, Yasuhito Nannya, Robert Paul Hasserjian…·Elli Papaemmanuil

The paper examines TP53 allelic states in MDS patients, finding that bi-allelic targeting is linked to worse outcomes, while mono-allelic targeting does not differ from wild-type patients.

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humanDNA methylation

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