Fabio Rocha Jimenez Vieira

Patterns and drivers of diatom diversity and abundance in the global ocean

This study analyzes diatom diversity and abundance in the global ocean using Tara Oceans data, identifying key environmental drivers and community patterns.

Insights into the diversity and function of DNA methyltransferases in microeukaryotes using the model diatom Phaeodactylum tricornutum

The paper identifies and characterizes DNA methyltransferase diversity in marine microeukaryotes, showing that loss of DNMT5a leads to reduced DNA methylation and increased transposable element activity in diatoms.

DAVI: a tool for clustering and visualising protein domain architectures

DAVI clusters and visualizes protein domain architectures, offering a user-friendly tool for comparing and analyzing domain structures.

A genomics approach reveals the global genetic polymorphism, structure and functional diversity of ten accessions of the marine model diatom Phaeodactylum tricornutum

The paper uses whole genome sequencing of ten Phaeodactylum tricornutum accessions to reveal genetic polymorphism, structure, and functional diversity across geographic and temporal scales.

2dSS: a web server for protein secondary structure visualization

2dSS is a web server that visualizes and compares protein secondary structure predictions through 2D-alignment and prediction comparison tools.

Integrative analysis of large scale transcriptome data draws a comprehensive functional landscape of Phaeodactylum tricornutum genome and evolutionary origin of diatoms

The paper integrates transcriptome data to annotate the Phaeodactylum tricornutum genome, identifies novel genes and alternative splicing, and explores the evolutionary origins of diatoms.