Author

Stefano Capomaccio

University of PerugiaORCID 0000-0002-0004-9272Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Organism:human· 2 Assay:bulk RNA-seq· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Alberto AcquadroiD· 1 shared Alexa M BarberiD· 1 shared Andrea PorcedduiD· 1 shared Anna R. DahlgreniD· 1 shared B. J. Murphy· 1 shared BD. Velie· 1 shared Bianca Waud· 1 shared Carrie J. FinnoiD· 1 shared

Activity by Year

2017-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperGenomics

Alberto AcquadroORCID

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3 papers

Recent·Most cited

Long-read RNA Sequencing Improves the Annotation of the Equine Transcriptome

Sichong Peng, Anna R. Dahlgren, Erin N. Hales, Alexa M Barber, Ted Kalbfleisch, Jessica L. Petersen, Rebecca R. Bellone, Mariusz Mackowski, Katia Cappelli, Stefano Capomaccio, Stephen J. Coleman, O. Distl, Elena Giulotto, Bianca Waud, Natasha Anne Hamilton, , Carrie J. Finno

The paper improves the equine transcriptome annotation using long-read RNA sequencing, achieving 45% better completeness and enhanced identification of alternative splicing and noncoding genes.

bioRxiv · Jun 7, 2022 · PreprintGenomics

Methylation content sensitive enzyme ddRAD (MCSeEd): a reference-free, whole genome profiling system to address cytosine/ adenine methylation changes

Gianpiero Marconi, Stefano Capomaccio, Cinzia Comino, Alberto Acquadro, Ezio Portis, Andrea Porceddu, Emidio Albertini

The paper introduces MCSeEd, a reference-free ddRAD method for whole-genome methylation profiling across multiple contexts, including 6mA, and provides a bioinformatic pipeline for differential methylation and SNP calling.

Scientific Reports · Oct 16, 2019Peer-reviewedGenomics

BITE: an R package for biodiversity analyses

Marco Milanesi, Stefano Capomaccio, Elia Vajana, Lorenzo Bomba, José Fernando Garcia, Paolo Ajmone‐Marsan, Licia Colli

BITE, an R package, wraps SNP quality control, Kolmogorov-Smirnov-checked representative subsampling, color-consistent ancestry plots, and bootstrap-supported TreeMix gene-flow trees for biodiversity genomics.

bioRxiv · Aug 29, 2017 · PreprintBioinformatics✦ In-depth digest