Author

Erin N. Hales

University of California, DavisORCID 0000-0002-8007-6552Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Developmental Biology· 2 Genetics· 1 Genomics· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:gene regulatory network inference· 3 Organism:human· 3 Research Focus:benchmarking· 2 Assay:bulk RNA-seq· 2 Research Focus:database / resource· 2 Research Focus:differential expression· 2 Assay:DNA methylation· 2 Approach:experimental assay· 2

Frequent Co-Authors

Carrie J. FinnoiD· 4 shared Jessica L. PeterseniD· 3 shared Rebecca R. BelloneiD· 3 shared Sichong PengiD· 3 shared Amin HaghaniiD· 2 shared Anna R. DahlgreniD· 2 shared Brenda LarisoniD· 2 shared Joseph Alan ZolleriD· 2 shared

Activity by Year

2022-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

4 shared papersDevelopmental Biology

Carrie J. FinnoORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Universal DNA methylation age across mammalian tissues

Ake Tzu-Hui Lu, Zhe Fei, Amin Haghani, Todd R. Robeck, Joseph Alan Zoller, Caesar Z. Li, Robert Lowe, Qi Jiang Yan, Joshua Zhang, H. Vu, Julia Ablaeva, Victoria A. Acosta-Rodríguez, Danielle M. Adams, Javier Almunia, Ajoy Aloysius, , June Mergl

The paper develops universal epigenetic clocks that accurately estimate age across mammalian tissues using DNA methylation data from 185 species.

Nature Aging · Aug 10, 2023Peer-reviewedDevelopmental Biology

Functional annotation of the animal genomes: an integrated annotation resource for the horse

Sichong Peng, Anna R. Dahlgren, Callum George Donnelly, Erin N. Hales, Jessica L. Petersen, Rebecca R. Bellone, Ted Kalbfleisch, Carrie J. Finno

This paper presents a comprehensive functional annotation of the horse genome, addressing limitations in current RNA-seq and comparative genomics approaches by integrating data from nine major tissues.

PLoS Genetics · Mar 2, 2023Peer-reviewedGenetics

Long-read RNA Sequencing Improves the Annotation of the Equine Transcriptome

Sichong Peng, Anna R. Dahlgren, Erin N. Hales, Alexa M Barber, Ted Kalbfleisch, Jessica L. Petersen, Rebecca R. Bellone, Mariusz Mackowski, Katia Cappelli, Stefano Capomaccio, Stephen J. Coleman, O. Distl, Elena Giulotto, Bianca Waud, Natasha Anne Hamilton, , Carrie J. Finno

The paper improves the equine transcriptome annotation using long-read RNA sequencing, achieving 45% better completeness and enhanced identification of alternative splicing and noncoding genes.

bioRxiv · Jun 7, 2022 · PreprintGenomics

DNA methylation aging and transcriptomic studies in horses

Steve Horvath, Amin Haghani, Sichong Peng, Erin N. Hales, Joseph Alan Zoller, Ken Raj, Brenda Larison, Todd R. Robeck, Jessica L. Petersen, Rebecca R. Bellone, Carrie J. Finno

This paper develops epigenetic clocks for horses using DNA methylation data from multiple tissues, showing age-related CpGs are near developmental genes and that castration does not significantly affect aging rate.

Nature Communications · Jan 10, 2022Peer-reviewedDevelopmental Biology