Author

Jiantao Shi

Chinese Academy of SciencesORCID 0000-0002-0039-8800Unclaimed ORCID profile · follow to get notified of new preprints

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Jiantao Shi1 paper

Biology Disciplines

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Bioinformatics· 2 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:database / resource· 2 Assay:DNA methylation· 2 Organism:human· 2 Research Focus:benchmarking· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Fan ZhangiD· 2 shared Fang Liu· 2 shared Hongcang GuiD· 2 shared Xiaojun SuniD· 2 shared Hailong ZhaoiD· 1 shared Han Li· 1 shared Han ShuiD· 1 shared Haoyi WangiD· 1 shared

Activity by Year

2022-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 40 mutual co-author links

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2 shared papersBioinformatics

Fan ZhangORCID

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3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintOct 29, 2026

CellMethMarker provides an integrated database of human cell- and tissue-type-specific DNA methylation markers

Xiaojun Sun, Yujie Peng, Yingyu Yi…·Fan Zhang

CellMethMarker provides a database of DNA methylation markers specific to human cell and tissue types, improving deconvolution accuracy in single-cell methylomes.

DOI 10.64898/2026.10.23.760902

humanDNA methylation

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BioinformaticsbioRxivPreprintOct 27, 2026

Xenograft supervision and joint methylation-fragment-end encoding define a reusable molecular scoring layer for cell-free tumor DNA

Xuchao Zhang, Xiaojun Sun, Rui Wang…·Fan Zhang

ctDNA-BERT scores individual bisulfite reads for cell-free DNA methylation analysis, achieving high accuracy in cancer staging without cohort-specific retraining.

DOI 10.64898/2026.10.26.761533

humanDNA methylation

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Molecular BiologybioRxivPreprintOct 9, 2022

Chromosome territory reorganization through artificial chromosome fusion is negligible to cell fate determination and mouse development.

Yuang Wang, Zhen Qu, Yi Fang…·Yun Zhao

This study fuses chromosomes 15 and 17 in mouse haploid embryonic stem cells and finds minimal impact on gene expression, pluripotency, and mouse development.

DOI 10.1101/2022.10.09.511475

mouseexperimental assay

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