Author

Shiro Fukuda

Research Center for Advanced Science and Technology, The University of TokyoORCID 0000-0002-0065-662XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Developmental Biology· 2

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 2 Organism:mouse· 2 Assay:scRNA-seq· 2 Assay:spatial transcriptomics· 2 Approach:statistical model· 2 Research Focus:cell type annotation· 1 Approach:experimental assay· 1 Assay:multiome· 1

Frequent Co-Authors

Akashi Taguchi· 2 shared Akiyasu IwaseiD· 2 shared Chisa ShukunamiiD· 2 shared Daiki SeyaiD· 2 shared Haruhiko AkiyamaiD· 2 shared Hiroki HigashiyamaiD· 2 shared Hiroki KuriharaiD· 2 shared Hiroyuki AburataniiD· 2 shared

Activity by Year

2022-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersDevelopmental Biology

Akashi Taguchi

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2 papers

Recent·Most cited

Developmental BiologybioRxivPreprintNov 9, 2025

Hox-Meis-relayed gene regulatory transition underlies cardiopharyngeal neural crest diversification

Akiyasu Iwase, Yasunobu Uchijima, Daiki Seya…·Hiroki Kurihara

The paper maps lineage trajectories and gene regulatory networks of cardiopharyngeal neural crest cells in mice, identifying a Hox-Meis-regulated transition associated with cardiac cushion development.

DOI 10.1101/2025.11.09.687497

mousescRNA-seq

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Developmental BiologybioRxivPreprintJun 23, 2022

Cardiac neural crest lineage diversity and underlying gene regulatory networks revealed by multimodal analysis

Akiyasu Iwase, Yasunobu Uchijima, Daiki Seya…·Hiroki Kurihara

The paper uses multimodal analysis to reveal cardiac neural crest lineage diversity and gene regulatory networks involved in their differentiation.

1 citation

mousescRNA-seq

𝕏 PostBluesky