Author

Paul Ogongo

University of California, San FranciscoORCID 0000-0002-0093-5768Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Immunology· 3 Microbiology· 1

Signature Assays, Organisms & Methods

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Organism:human· 4 Approach:experimental assay· 3 Research Focus:cell type annotation· 2 Research Focus:clustering· 2 Approach:deep learning· 2 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Assay:proteomics· 2

Frequent Co-Authors

Joel D. ErnstiD· 3 shared Gregory Sadat Ouma· 2 shared Julia HuffakeriD· 2 shared Kidist BoboshaiD· 2 shared Liya WassieiD· 2 shared Samuel Gurrion OumaiD· 2 shared Akshay Karthikeyan· 1 shared Alasdair J. LeslieiD· 1 shared

Activity by Year

2024-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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3 shared papersImmunology

Joel D. ErnstORCID

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4 papers

Recent·Most cited

ImmunologyJCI InsightPeer-reviewedJan 27, 2026

Rare Variable M. tuberculosis Antigens induce predominant Th17 responses in human infection

Paul Ogongo, Liya Wassie, Anthony Tran…·the TBRU ASTRa Study Group

The paper identifies Rare Variable Mtb Antigens (RVMA) that induce Th17 responses in human TB infection, suggesting their potential as vaccine antigens to enhance Th17 immunity.

20 citationstop 1%

humanproteomics

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MicrobiologyScience Translational MedicinePeer-reviewedNov 5, 2025

Immunopeptidomics informs discovery and delivery of Mycobacterium tuberculosis MHC-II antigens for vaccine design

Owen K. Leddy, Paul Ogongo, Julia Huffaker…·Bryan D. Bryson

This study identifies MHC-II antigens from Mycobacterium tuberculosis using mass spectrometry and evaluates mRNA vaccine immunogens to enhance T cell recognition.

16 citationstop 4%

humanproteomics

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ImmunologybioRxivPreprintApr 12, 2025

Evolution of T cell responses in the tuberculin skin test reveals generalisable Mtb-reactive T cell metaclones.

Carolin T. Turner, Andreas Tiffeau-Mayer, Joshua Rosenheim…·Mahdad Noursadeghi

The paper tracks T cell responses over time in the tuberculin skin test to identify Mtb-reactive T cell metaclones that are immunodominant across individuals.

2 citations

humanscRNA-seq

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ImmunologybioRxivPreprintNov 5, 2024

Integrated, high-dimensional analysis of CD4 T cell epitope specificities and phenotypes reveals unexpected diversity in the response to Mycobacterium tuberculosis

Heather Mead, Jung Hwa Kirschman, Caroline E. Harms…·John A. Altin

The paper introduces CRESTA, a method to analyze CD4 T cell epitope specificities and phenotypes, revealing diverse responses to Mycobacterium tuberculosis.

3 citations

humanscRNA-seq

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