Kate B. Cook

ACCOST identifies significant changes in chromatin conformation between Hi-C experiments by accounting for the genomic distance effect, outperforming existing methods.

The paper trains machine learning models to predict gene expression in Plasmodium falciparum across three red blood cell stages using genomic and epigenomic data.

This study examines changes in genome organization during the transmission stages of Plasmodium parasites and finds that three-dimensional genome structure is linked to transcriptional activity of gene families involved in pathogenesis and immune evasion.

This study examines the 3D genome organization in diploid yeast, finding dynamic homolog proximity and environment-induced gene relocalization.