Author

Fei Xu

University of BaselORCID 0000-0002-0593-5142Unclaimed ORCID profile · follow to get notified of new preprints

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Fei Xu1 paper

Biology Disciplines

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Developmental Biology· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Organism:C. elegans· 2 Assay:Hi-C· 2 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:dimensionality reduction· 1 Approach:experimental assay· 1 Approach:machine learning (classical)· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Ahilya N. SawhiD· 2 shared Susan E. MangoiD· 2 shared Dania Camila PulidoiD· 1 shared David B. BrückneriD· 1 shared Geoffrey FucileiD· 1 shared Hermina Petric MaretićiD· 1 shared Ivan DokmanićiD· 1 shared Jia Emil YouiD· 1 shared

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2025-2025 · peak 2/yr

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2 shared papersDevelopmental Biology

Ahilya N. SawhORCID

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2 papers

Recent·Most cited

Rapid canalization of chromosome conformation-transcription fingerprints during embryogenesis revealed by fully-automated cell identity decoding with CeSCALE

Κωνσταντίνος Ντέμος, Fei Xu, Nour-Zaynab Bazzi, Geoffrey Fucile, Hermina Petric Maretić, Ivan Dokmanić, Susan E. Mango, Ahilya N. Sawh

The paper develops CeSCALE to analyze lineage-resolved conformation-transcription relationships in C. elegans embryos, revealing robust inheritance of local chromatin features during development.

bioRxiv · Oct 22, 2025 · PreprintDevelopmental Biology

Single-molecule chromosome tracing reveals a diversity of megabase heterochromatin domains

Dania Camila Pulido, Jia Emil You, Fei Xu, Tobias Verheijen, Ahilya N. Sawh, Pavel I. Kos, Luca Giorgetti, Nacho Molina, David B. Brückner, Susan E. Mango

The paper identifies three types of megabase-scale heterochromatin domains in C. elegans using single-molecule tracing and shows their developmental dynamics and structural differences.

bioRxiv · Sep 3, 2025 · PreprintGenomics