Author

Todd A. Trappe

Ball State UniversityORCID 0000-0002-0609-5632Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 2 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Organism:human· 1 Assay:long-read sequencing· 1 Organism:rat· 1 Assay:scATAC-seq· 1

Frequent Co-Authors

Gregory R. SmithiD· 2 shared Mary Anne S. AmperiD· 2 shared Stephen B. MontgomeryiD· 2 shared Stuart C. SealfoniD· 2 shared Venugopalan D. NairiD· 2 shared Abdalla AhmediD· 1 shared Alexandria Vornholt· 1 shared Aliza B. Rubenstein· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 39 mutual co-author links

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2 shared papersPhysiology

Gregory R. SmithORCID

Mutual co-authors in cluster

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2 papers

Recent·Most cited

The Long Non-coding RNA Landscape of Endurance Exercise Training

Bernardo Bonilauri, Gregory R. Smith, Archana Natarajan Raja, David Jimenez‐Morales, Abdalla Ahmed, Christopher A. Jin, Lauren Marie Sparks, Martin J. Walsh, Stephen B. Montgomery, Joshua N. Adkins, José Juan Almagro Armenteros, David Amar, Mary Anne S. Amper, Euan Angus Ashley, Marcas M. Bamman, , Xuechen Yu

This study identifies tissue-specific lncRNA responses to endurance exercise in rats, revealing sex differences and potential therapeutic implications.

Molecular Metabolism · Apr 20, 2026Peer-reviewedPhysiology

Integrated single-cell multiome analysis reveals muscle fiber-type gene regulatory circuitry modulated by endurance exercise

Aliza B. Rubenstein, Gregory R. Smith, Zidong Zhang, Xi Chen, Toby L. Chambers, Frederique Murielle Ruf-Zamojski, Natalia Mendelev, Wan Sze Cheng, Michel Zamojski, Mary Anne S. Amper, Venugopalan D. Nair, Andrew R. Marderstein, Stephen B. Montgomery, Olga G. Troyanskaya, Elena Zaslavsky, , Stuart C. Sealfon

The paper uses single-nucleus multiome sequencing to analyze gene regulatory changes in human skeletal muscle after endurance exercise, identifying fiber-type specific regulatory programs and transcription factor networks.

Genome Research · Jul 1, 2025Peer-reviewedGenomics