Thomas Kroes

Cross-species consensus atlas of the primate basal ganglia

The paper creates a cross-species consensus atlas of primate basal ganglia cell types using multiomic data from human, macaque, and marmoset, identifying 61 conserved cell types and a novel hybrid medium spiny neuron type.

GeneSurfer Enables Transcriptome-wide Exploration and Functional Annotation of Gene Co-expression Modules in 3D Spatial Transcriptomics Data

GeneSurfer explores and annotates gene co-expression modules in 3D spatial transcriptomics data, identifying localized transcriptome-wide co-expression patterns.

SpaceWalker: Interactive Gradient Exploration for Spatial Transcriptomics Data

SpaceWalker explores spatial transcriptomics data gradients to reveal tissue architecture and gene expression patterns through interactive visualization.

Comparative transcriptomics reveals human-specific cortical features

This study uses single nucleus transcriptomics to compare human and non-human primate cortical tissues, identifying human-specific gene expression patterns and their potential functional roles.