Author

Federica Marasca

Istituto Nazionale Genetica MolecolareORCID 0000-0002-0699-5323Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Approach:statistical model· 3 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1 Research Focus:database / resource· 1

Frequent Co-Authors

Beatrice BodegaiD· 2 shared Benedetto PolimeniiD· 2 shared Valeria RanzaniiD· 2 shared A. NaughtoniD· 1 shared Akira HasegawaiD· 1 shared Alessandro VitrioloiD· 1 shared Alice CortesiiD· 1 shared Alice LamboleziD· 1 shared

Activity by Year

2019-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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2 shared papersBioinformatics

Beatrice BodegaORCID

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3 papers

Recent·Most cited

GenomicsbioRxivPreprintAug 26, 2026

The human RNA-DNA interactome is cell type-specific and dynamic

Alice Lambolez, Pelin Sahlén, Wenjing Kang…·Giuseppe Testa

The paper maps RNA-DNA interactions in 16 human cell types, showing cell-type-specific and dynamic networks that correlate with gene regulation and disease traits.

1 citation

humanbulk RNA-seq

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BioinformaticsbioRxivPreprintSep 16, 2022

IRescue: uncertainty-aware quantification of transposable elements expression at single cell level

Benedetto Polimeni, Federica Marasca, Valeria Ranzani, Beatrice Bodega

IRescue quantifies transposable element expression in single-cell RNA sequencing data, improving the detection of cellular heterogeneity and TE-specific splicing isoforms.

DOI 10.1101/2022.09.16.508229

humanscRNA-seq

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GenomicsGenome ResearchPeer-reviewedJun 1, 2019

4q-D4Z4 chromatin architecture regulates the transcription of muscle atrophic genes in FSHD

Alice Cortesi, Matthieu Pesant, Shruti Sinha…·Beatrice Bodega

The paper shows that the 4q-D4Z4 chromatin architecture regulates muscle atrophy gene transcription in FSHD by altering 3D nuclear contacts and chromatin states.

21 citations

humanChIP-seq

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