Author

Benedetto Polimeni

Istituto Nazionale Genetica MolecolareORCID 0000-0002-7064-7294Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:human· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Assay:scRNA-seq· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Federica MarascaiD· 2 shared Valeria RanzaniiD· 2 shared A. NaughtoniD· 1 shared Akira HasegawaiD· 1 shared Alessandro VitrioloiD· 1 shared Alice LamboleziD· 1 shared Alok K. SharmaiD· 1 shared Amanda Piveta SchnepperiD· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersGenomics

Federica MarascaORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

The human RNA-DNA interactome is cell type-specific and dynamic

Alice Lambolez, Pelin Sahlén, Wenjing Kang, Xufeng Shu, Jessica Severin, Rodrigo Pracana, Ilyes Abdelhamid, Bhavya Dhaka, Christophe Vroland, Valeria Ranzani, Benedetto Polimeni, Masaru Koido, Andrea Vandelli, Maria Yu. Mintseva, Marton Rohaly Medved, , Giuseppe Testa

The paper maps RNA-DNA interactions in 16 human cell types, showing cell-type-specific and dynamic networks that correlate with gene regulation and disease traits.

bioRxiv · Aug 26, 2026 · PreprintGenomics

IRescue: uncertainty-aware quantification of transposable elements expression at single cell level

Benedetto Polimeni, Federica Marasca, Valeria Ranzani, Beatrice Bodega

IRescue quantifies transposable element expression in single-cell RNA sequencing data, improving the detection of cellular heterogeneity and TE-specific splicing isoforms.

bioRxiv · Sep 16, 2022 · PreprintBioinformatics