Author

Valeria Ranzani

Istituto Nazionale Genetica MolecolareORCID 0000-0002-0602-5335Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Alice LamboleziD· 2 shared Beatrice BodegaiD· 2 shared Benedetto PolimeniiD· 2 shared Callum ParriD· 2 shared Federica MarascaiD· 2 shared Hiromi Nishiyori-SuekiiD· 2 shared Ivano LegniniiD· 2 shared Jen-Chien ChangiD· 2 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersGenomics

Alice LambolezORCID

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3 papers

Recent·Most cited

The human RNA-DNA interactome is cell type-specific and dynamic

Alice Lambolez, Pelin Sahlén, Wenjing Kang, Xufeng Shu, Jessica Severin, Rodrigo Pracana, Ilyes Abdelhamid, Bhavya Dhaka, Christophe Vroland, Valeria Ranzani, Benedetto Polimeni, Masaru Koido, Andrea Vandelli, Maria Yu. Mintseva, Marton Rohaly Medved, , Giuseppe Testa

The paper maps RNA-DNA interactions in 16 human cell types, showing cell-type-specific and dynamic networks that correlate with gene regulation and disease traits.

bioRxiv · Aug 26, 2026 · PreprintGenomics

Genomic codes governing enhancer RNA fate

Chi Wai Yip, Callum Parr, Hazuki Takahashi, Kayoko Yasuzawa, Matthew N. Z. Valentine, Hiromi Nishiyori-Sueki, Camilla Ugolini, Valeria Ranzani, Mitsuyoshi Murata, Masaki Kato, Wenjing Kang, Giulia Fois, Wing Hin Yip, Youtaro Shibayama, Andre Sim, , Piero Carninci

This paper introduces CFC-seq and SALA to sequence non-poly(A) RNAs, identifies 39,425 novel transcriptional units, and reveals a genomic code governing enhancer RNA fate based on promoter architecture.

bioRxiv · Oct 31, 2024 · PreprintGenomics

IRescue: uncertainty-aware quantification of transposable elements expression at single cell level

Benedetto Polimeni, Federica Marasca, Valeria Ranzani, Beatrice Bodega

IRescue quantifies transposable element expression in single-cell RNA sequencing data, improving the detection of cellular heterogeneity and TE-specific splicing isoforms.

bioRxiv · Sep 16, 2022 · PreprintBioinformatics