Beatrice Bodega

This paper introduces CFC-seq and SALA to sequence non-poly(A) RNAs, identifies 39,425 novel transcriptional units, and reveals a genomic code governing enhancer RNA fate based on promoter architecture.

IRescue quantifies transposable element expression in single-cell RNA sequencing data, improving the detection of cellular heterogeneity and TE-specific splicing isoforms.

The paper identifies widespread transcription initiation at microsatellites across species and develops deep learning models to predict STR-associated transcription and its impact on disease variants.

The paper shows that the 4q-D4Z4 chromatin architecture regulates muscle atrophy gene transcription in FSHD by altering 3D nuclear contacts and chromatin states.